IL_7ST7_033

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_033 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1296

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ST7|1|1|U|1004
7ST7|1|1|C|1005
7ST7|1|1|C|1006
7ST7|1|1|C|1007
7ST7|1|1|A|1008
7ST7|1|1|A|1009
7ST7|1|1|A|1010
7ST7|1|1|G|1011
*
7ST7|1|1|C|1150
7ST7|1|1|A|1151

Current chains

Chain 1

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20