IL_7ST7_044
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGCGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 7ST7|1|1|C|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ST7_044 not in the Motif Atlas
- Homologous match to IL_5J7L_288
- Geometric discrepancy: 0.1201
- The information below is about IL_5J7L_288
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
7ST7|1|1|C|1208
7ST7|1|1|U|1209
7ST7|1|1|G|1210
7ST7|1|1|C|1211
7ST7|1|1|G|1212
7ST7|1|1|A|1213
7ST7|1|1|A|1214
7ST7|1|1|G|1215
*
7ST7|1|1|U|1234
7ST7|1|1|G|1235
7ST7|1|1|G|1236
7ST7|1|1|A|1237
7ST7|1|1|G|1238
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
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