IL_7ST7_121
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7ST7|1|3|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ST7_121 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1676
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ST7|1|3|G|147
7ST7|1|3|G|148
7ST7|1|3|A|149
7ST7|1|3|U|150
7ST7|1|3|A|151
7ST7|1|3|A|152
7ST7|1|3|C|153
*
7ST7|1|3|G|168
7ST7|1|3|C|169
7ST7|1|3|U|170
7ST7|1|3|A|171
7ST7|1|3|A|172
7ST7|1|3|U|173
7ST7|1|3|A|174
7ST7|1|3|C|175
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
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