IL_7ST7_125

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_125 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1106

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7ST7|1|3|G|292
7ST7|1|3|G|293
*
7ST7|1|3|U|304
7ST7|1|3|G|305
7ST7|1|3|A|306
7ST7|1|3|C|307
7ST7|1|3|C|308

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16