IL_7ST7_127

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_127 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1279

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7ST7|1|3|A|371
7ST7|1|3|C|372
7ST7|1|3|A|373
7ST7|1|3|A|374
7ST7|1|3|U|375
*
7ST7|1|3|A|389
7ST7|1|3|U|390

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain U

30S ribosomal protein S16