IL_7ST7_168
3D structure
- PDB id
- 7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ST7_168 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1566
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ST7|1|3|G|1401
7ST7|1|3|C|1402
7ST7|1|3|C|1403
7ST7|1|3|C|1404
*
7ST7|1|3|G|1497
7ST7|1|3|U|1498
7ST7|1|3|A|1499
7ST7|1|3|A|1500
7ST7|1|3|C|1501
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain Q
- 30S ribosomal protein S12
- Chain h
- Viomycin
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