IL_7ST7_179

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

7ST7|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_179 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2991

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7ST7|1|1|G|879
7ST7|1|1|G|880
7ST7|1|1|G|881
*
7ST7|1|1|U|895
7ST7|1|1|A|896
7ST7|1|1|C|897
7ST7|1|1|C|898

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA