3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ST7_186 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0998
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7ST7|1|1|U|1851
7ST7|1|1|U|1852
7ST7|1|1|A|1853
7ST7|1|1|A|1854
7ST7|1|1|U|1855
7ST7|1|1|U|1856
7ST7|1|1|G|1857
7ST7|1|1|A|1858
7ST7|1|1|U|1859
7ST7|1|1|G|1860
*
7ST7|1|1|U|1882
7ST7|1|1|U|1883
7ST7|1|1|G|1884
7ST7|1|1|A|1885
7ST7|1|1|U|1886
7ST7|1|1|C|1887
7ST7|1|1|G|1888
7ST7|1|1|A|1889
7ST7|1|1|A|1890
7ST7|1|1|G|1891

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain a
50S ribosomal protein L1

Coloring options:


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