IL_7ST7_189

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCCU*AUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ST7_189 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3294

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7ST7|1|1|A|2101
7ST7|1|1|G|2102
7ST7|1|1|C|2103
7ST7|1|1|C|2104
7ST7|1|1|U|2105
*
7ST7|1|1|A|2184
7ST7|1|1|U|2185
7ST7|1|1|G|2186
7ST7|1|1|U|2187
7ST7|1|1|U|2188

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L1