Motif IL_71154.1 Version IL_71154.1 of this group appears in releases 4.0 to 4.0
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 3-8 | 4-7 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4LFB_065 | 4LFB | 0.5909 | 0 | Triple non-canonical cWW pairs | A | SSU rRNA | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | * | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | ncWWa | cWW | ncwW | cWW | cWW | ||
2 | IL_8B0X_176 | 8B0X | 0.6023 | 0 | Triple non-canonical cWW pairs (H) | A | SSU rRNA | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | * | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | cWWa | cWW | ncwW | cWW | cWW | ||
3 | IL_8D29_010 | 8D29 | 0.5494 | 0 | Partly complementary | C | RNA (34-MER) | G | 27 | C | 28 | A | 29 | G | 30 | C | 31 | * | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | cWW | ncWW | ncWW | cWW | cWW | ||
4 | IL_8P9A_349 | 8P9A | 0.5489 | 0 | AR | LSU rRNA | C | 3162 | A | 3163 | C | 3164 | A | 3165 | C | 3166 | * | G | 3284 | C | 3285 | G | 3286 | U | 3287 | G | 3288 | cWW | ncWW | ncWWa | cWW | ||||
5 | IL_7VYX_004 | 7VYX | 0.4912 | 0 | Partly complementary | C | sgRNA | U | 37 | U | 38 | A | 39 | U | 40 | C | 41 | * | G | 21 | G | 22 | A | 23 | U | 24 | G | 25 | ncWW | ncwW | ncwW | ncWWa | cWW | ||
6 | IL_7VYX_008 | 7VYX | 0.3917 | 0 | Partly complementary | C | sgRNA | G | 11 | A | 12 | C | 13 | U | 14 | U | 15 | * | G | 51 | U | 52 | G | 53 | C | 54 | C | 55 | cWW | ncWWa | ncWW | ncWw | ncWWa | ||
7 | IL_8VMA_004 | 8VMA | 0.1289 | 0 | Triple non-canonical cWW pairs | C | Enterovirus 5' cloverleaf cis-acting replication element | A | 71 | C | 72 | U | 73 | U | 74 | G | 75 | * | C | 51 | U | 52 | C | 53 | C | 54 | U | 55 | cWW | ncwW | ncWW | cWw | cWW | ||
8 | IL_8VM8_003 | 8VM8 | 0.0849 | 0 | Triple non-canonical cWW pairs | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 54 | U | 55 | C | 56 | U | 57 | G | 58 | * | C | 74 | U | 75 | U | 76 | U | 77 | G | 78 | cWW | cwW | cWW | cWw | cWW | ||
9 | IL_8VM9_004 | 8VM9 | 0.0000 | 0 | Triple non-canonical cWW pairs | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 48 | U | 49 | C | 50 | U | 51 | G | 52 | * | C | 68 | U | 69 | U | 70 | U | 71 | G | 72 | cWW | cwW | ncWW | cWW | cWw | cWW | |
10 | IL_5BTM_001 | 5BTM | 0.2106 | 0 | Triple non-canonical cWW pairs | A | RNA (55-mer) | U | 10 | U | 11 | C | 12 | U | 13 | A | 14 | * | U | 42 | U | 43 | C | 44 | U | 45 | A | 46 | cWW | ncWW | cwW | ncWw | cwW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUCUG*CUUUG | 2 |
GGAAC*GGAAU | 1 |
GGAAU*AGAAU | 1 |
GCAGC*GAUAC | 1 |
CACAC*GCGUG | 1 |
UUAUC*GGAUG | 1 |
GACUU*GUGCC | 1 |
ACUUG*CUCCU | 1 |
UUCUA*UUCUA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*GAA | 2 |
UCU*UUU | 2 |
CAG*AUA | 1 |
ACA*CGU | 1 |
UAU*GAU | 1 |
ACU*UGC | 1 |
CUU*UCC | 1 |
UCU*UCU | 1 |
Release history
Release | 4.0 |
---|---|
Date | 2025-08-13 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple non-canonical cWW pairs (5)
- Partly complementary (3)
- Triple non-canonical cWW pairs (H) (1)
- (1)
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.40 | Max 0.64
Coloring options: