IL_7SUK_004

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_004 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2361

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7SUK|1|8|U|150
7SUK|1|8|G|151
7SUK|1|8|U|152
7SUK|1|8|G|153
*
7SUK|1|8|U|161
7SUK|1|8|A|162
7SUK|1|8|G|163
7SUK|1|8|A|164

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A

Chain LV

Ribosome biogenesis protein ENP2

Chain LX

RNA cytidine acetyltransferase