IL_7SUK_005

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CUCGAC*GAAG

Length

10 nucleotides

Bulged bases

7SUK|1|8|U|185

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_005 not in the Motif Atlas

Homologous match to IL_8C3A_404

Geometric discrepancy: 0.5562

The information below is about IL_8C3A_404

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7SUK|1|8|C|184
7SUK|1|8|U|185
7SUK|1|8|C|186
7SUK|1|8|G|187
7SUK|1|8|A|188
7SUK|1|8|C|189
*
7SUK|1|8|G|196
7SUK|1|8|A|197
7SUK|1|8|A|198
7SUK|1|8|G|199

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A

Chain SP

U3 small nucleolar RNA-associated protein 20