IL_7SUK_013

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

7SUK|1|8|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_013 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3267

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7SUK|1|8|G|514
7SUK|1|8|A|515
7SUK|1|8|G|516
*
7SUK|1|8|C|536
7SUK|1|8|G|537
7SUK|1|8|A|538
7SUK|1|8|G|539
7SUK|1|8|G|540
7SUK|1|8|A|541
7SUK|1|8|A|542
7SUK|1|8|C|543

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1