IL_7SUK_024

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_024 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2407

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7SUK|1|8|G|1041
7SUK|1|8|G|1042
7SUK|1|8|A|1043
7SUK|1|8|U|1044
*
7SUK|1|8|G|1074
7SUK|1|8|C|1075
7SUK|1|8|A|1076
7SUK|1|8|C|1077

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain LE

40S ribosomal protein S22-A

Chain LU

Protein SOF1