IL_7SUK_029

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7SUK|1|8|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_029 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.213

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7SUK|1|8|G|1268
7SUK|1|8|U|1269
7SUK|1|8|G|1270
*
7SUK|1|8|C|1440
7SUK|1|8|C|1441

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain SJ

Ribosomal RNA small subunit methyltransferase NEP1

Chain SZ

Essential nuclear protein 1