IL_7SUK_035

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_035 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.3995

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7SUK|1|8|U|1669
7SUK|1|8|G|1670
7SUK|1|8|A|1671
7SUK|1|8|G|1672
*
7SUK|1|8|C|1729
7SUK|1|8|A|1730
7SUK|1|8|A|1731
7SUK|1|8|A|1732

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain LR

U3 small nucleolar RNA-associated protein 13