IL_7SUK_049

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_049 not in the Motif Atlas

Geometric match to IL_5J7L_011

Geometric discrepancy: 0.2018

The information below is about IL_5J7L_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7SUK|1|L0|C|240
7SUK|1|L0|U|241
7SUK|1|L0|C|242
*
7SUK|1|L0|G|271
7SUK|1|L0|A|272
7SUK|1|L0|G|273

Current chains

Chain L0

5' ETS

Nearby chains

Chain L2

U3 small nucleolar RNA; U3 snoRNA

Chain L5

40S ribosomal protein S5

Chain LC

40S ribosomal protein S16-A

Chain LS

U3 small nucleolar RNA-associated protein 18

Chain SY

U3 small nucleolar RNA-associated protein 11