IL_7SUK_050

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

7SUK|1|L0|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_050 not in the Motif Atlas

Geometric match to IL_4O26_001

Geometric discrepancy: 0.3235

The information below is about IL_4O26_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7SUK|1|L0|C|245
7SUK|1|L0|G|246
*
7SUK|1|L0|U|266
7SUK|1|L0|U|267
7SUK|1|L0|G|268

Current chains

Chain L0

5' ETS

Nearby chains

Chain LC

40S ribosomal protein S16-A

Chain LZ

U3 small nucleolar ribonucleoprotein protein IMP3

Chain SI

Ribosome biogenesis protein BMS1

Chain SY

U3 small nucleolar RNA-associated protein 11