IL_7SUK_051

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GC*GCGAUU

Length

8 nucleotides

Bulged bases

7SUK|1|L0|G|259, 7SUK|1|L0|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_051 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1317

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7SUK|1|L0|G|250
7SUK|1|L0|C|251
*
7SUK|1|L0|G|257
7SUK|1|L0|C|258
7SUK|1|L0|G|259
7SUK|1|L0|A|260
7SUK|1|L0|U|261
7SUK|1|L0|U|262

Current chains

Chain L0

5' ETS

Nearby chains

Chain SB

Nucleolar protein 58

Chain SI

Ribosome biogenesis protein BMS1

Chain SN

Ribosome biogenesis protein UTP30

Chain SV

Regulator of rDNA transcription protein 14

Chain SY

U3 small nucleolar RNA-associated protein 11