IL_7SUK_053

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UG*UAA

Length

5 nucleotides

Bulged bases

7SUK|1|L0|A|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_053 not in the Motif Atlas

Geometric match to IL_1JZV_002

Geometric discrepancy: 0.3456

The information below is about IL_1JZV_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7SUK|1|L0|U|340
7SUK|1|L0|G|341
*
7SUK|1|L0|U|384
7SUK|1|L0|A|385
7SUK|1|L0|A|386

Current chains

Chain L0

5' ETS

Nearby chains

Chain LW

U3 small nucleolar RNA-associated protein 7

Chain NE

Protein FAF1

Chain SS

U3 small nucleolar RNA-associated protein 14