IL_7SUK_060

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_060 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.1776

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7SUK|1|L0|A|497
7SUK|1|L0|G|498
*
7SUK|1|L0|U|540
7SUK|1|L0|U|541
7SUK|1|L0|U|542

Current chains

Chain L0

5' ETS

Nearby chains

Chain LP

U3 small nucleolar RNA-associated protein 6

Chain SS

U3 small nucleolar RNA-associated protein 14