IL_7SUK_062

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GGU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_062 not in the Motif Atlas

Geometric match to IL_4M4O_002

Geometric discrepancy: 0.1296

The information below is about IL_4M4O_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7SUK|1|L0|G|505
7SUK|1|L0|G|506
7SUK|1|L0|U|507
*
7SUK|1|L0|A|529
7SUK|1|L0|A|530
7SUK|1|L0|C|531

Current chains

Chain L0

5' ETS

Nearby chains

Chain LP

U3 small nucleolar RNA-associated protein 6

Chain SA

Nucleolar protein 56

Chain SS

U3 small nucleolar RNA-associated protein 14