IL_7SUK_063

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

7SUK|1|L0|U|525

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_063 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2787

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7SUK|1|L0|A|510
7SUK|1|L0|G|511
*
7SUK|1|L0|U|524
7SUK|1|L0|U|525
7SUK|1|L0|U|526

Current chains

Chain L0

5' ETS

Nearby chains

Chain LU

Protein SOF1

Chain SA

Nucleolar protein 56

Chain SS

U3 small nucleolar RNA-associated protein 14