IL_7SUK_076

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AAA*UGUUUAAUU

Length

12 nucleotides

Bulged bases

7SUK|1|L0|G|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SUK_076 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1614

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7SUK|1|L0|A|93
7SUK|1|L0|A|94
7SUK|1|L0|A|95
*
7SUK|1|L0|U|149
7SUK|1|L0|G|150
7SUK|1|L0|U|151
7SUK|1|L0|U|152
7SUK|1|L0|U|153
7SUK|1|L0|A|154
7SUK|1|L0|A|155
7SUK|1|L0|U|156
7SUK|1|L0|U|157

Current chains

Chain L0

5' ETS

Nearby chains

Chain LH

NET1-associated nuclear protein 1

Chain LJ

U3 small nucleolar RNA-associated protein 15

Chain LL

U3 small nucleolar RNA-associated protein 5