IL_7SYG_013

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7SYG|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1975

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7SYG|1|2|G|145
7SYG|1|2|G|146
7SYG|1|2|A|147
7SYG|1|2|U|148
7SYG|1|2|A|149
7SYG|1|2|A|150
7SYG|1|2|C|151
*
7SYG|1|2|G|167
7SYG|1|2|C|168
7SYG|1|2|U|169
7SYG|1|2|A|170
7SYG|1|2|A|171
7SYG|1|2|U|172
7SYG|1|2|A|173
7SYG|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24