3D structure

PDB id
7SYG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
7SYG|1|2|U|428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYG_021 not in the Motif Atlas
Geometric match to IL_4V88_404
Geometric discrepancy: 0.1509
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7SYG|1|2|G|411
7SYG|1|2|G|412
7SYG|1|2|G|413
*
7SYG|1|2|C|424
7SYG|1|2|G|425
7SYG|1|2|A|426
7SYG|1|2|U|427
7SYG|1|2|U|428
7SYG|1|2|C|429

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
40S ribosomal protein S4
Chain K
uS4
Chain Y
uS12

Coloring options:


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