IL_7SYG_104
3D structure
- PDB id
- 7SYG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GACAGGAUUGA*UCUCGAUUC
- Length
- 20 nucleotides
- Bulged bases
- 7SYG|1|2|G|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYG_104 not in the Motif Atlas
- Homologous match to IL_8C3A_453
- Geometric discrepancy: 0.4794
- The information below is about IL_8C3A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38882.1
- Basepair signature
- cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7SYG|1|2|G|1281
7SYG|1|2|A|1282
7SYG|1|2|C|1283
7SYG|1|2|A|1284
7SYG|1|2|G|1285
7SYG|1|2|G|1286
7SYG|1|2|A|1287
7SYG|1|2|U|1288
7SYG|1|2|U|1289
7SYG|1|2|G|1290
7SYG|1|2|A|1291
*
7SYG|1|2|U|1308
7SYG|1|2|C|1309
7SYG|1|2|U|1310
7SYG|1|2|C|1311
7SYG|1|2|G|1312
7SYG|1|2|A|1313
7SYG|1|2|U|1314
7SYG|1|2|U|1315
7SYG|1|2|C|1316
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain L
- eS10
- Chain N
- eS12
- Chain e
- eS29
- Chain g
- 40S ribosomal protein S27a
Coloring options: