IL_7SYG_114

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7SYG|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYG_114 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2585

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7SYG|1|2|G|925
7SYG|1|2|A|926
*
7SYG|1|2|U|1015
7SYG|1|2|U|1016
7SYG|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27