IL_7SYH_028

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGU*ACGAGGAUC

Length

13 nucleotides

Bulged bases

7SYH|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_028 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3651

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93503.1

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7SYH|1|2|G|563
7SYH|1|2|A|564
7SYH|1|2|G|565
7SYH|1|2|U|566
*
7SYH|1|2|A|584
7SYH|1|2|C|585
7SYH|1|2|G|586
7SYH|1|2|A|587
7SYH|1|2|G|588
7SYH|1|2|G|589
7SYH|1|2|A|590
7SYH|1|2|U|591
7SYH|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30