IL_7SYH_035

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAGUU*AAUCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|C|676
7SYH|1|2|G|677
7SYH|1|2|U|678
7SYH|1|2|A|679
7SYH|1|2|G|680
7SYH|1|2|U|681
7SYH|1|2|U|682
*
7SYH|1|2|A|1023
7SYH|1|2|A|1024
7SYH|1|2|U|1025
7SYH|1|2|C|1026
7SYH|1|2|A|1027
7SYH|1|2|A|1028
7SYH|1|2|G|1029

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12