IL_7SYH_042
3D structure
- PDB id
- 7SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYH_042 not in the Motif Atlas
- Geometric match to IL_5TBW_027
- Geometric discrepancy: 0.2258
- The information below is about IL_5TBW_027
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7SYH|1|2|G|874
7SYH|1|2|A|875
7SYH|1|2|C|876
*
7SYH|1|2|G|910
7SYH|1|2|C|911
7SYH|1|2|C|912
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- 40S ribosomal protein S7
- Chain M
- uS17
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