IL_7SYH_069
3D structure
- PDB id
- 7SYH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYH_069 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.1433
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7SYH|1|2|A|1537
7SYH|1|2|C|1538
7SYH|1|2|U|1539
*
7SYH|1|2|A|1594
7SYH|1|2|U|1595
7SYH|1|2|U|1596
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain T
- uS13
- Chain U
- eS19
- Chain a
- 40S ribosomal protein S25
Coloring options: