3D structure

PDB id
7SYH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
ACU*AUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7SYH_069 not in the Motif Atlas
Geometric match to IL_1Y27_001
Geometric discrepancy: 0.1433
The information below is about IL_1Y27_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7SYH|1|2|A|1537
7SYH|1|2|C|1538
7SYH|1|2|U|1539
*
7SYH|1|2|A|1594
7SYH|1|2|U|1595
7SYH|1|2|U|1596

Current chains

Chain 2
18S rRNA

Nearby chains

Chain G
uS7
Chain T
uS13
Chain U
eS19
Chain a
40S ribosomal protein S25

Coloring options:


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