IL_7SYH_077

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_077 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1547

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7SYH|1|2|C|1717
7SYH|1|2|G|1718
7SYH|1|2|A|1719
7SYH|1|2|U|1720
*
7SYH|1|2|A|1813
7SYH|1|2|G|1814
7SYH|1|2|A|1815
7SYH|1|2|G|1816

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

60s ribosomal protein l41