IL_7SYH_088

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|z|C|255
7SYH|1|z|G|256
7SYH|1|z|A|257
7SYH|1|z|G|258
7SYH|1|z|U|259
7SYH|1|z|A|260
7SYH|1|z|G|261
*
7SYH|1|z|C|272
7SYH|1|z|G|273
7SYH|1|z|A|274
7SYH|1|z|A|275
7SYH|1|z|A|276
7SYH|1|z|G|277

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA