IL_7SYH_103

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUACG*CGCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_103 not in the Motif Atlas

Geometric match to IL_5J7L_056

Geometric discrepancy: 0.3791

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7SYH|1|2|C|1559
7SYH|1|2|U|1560
7SYH|1|2|A|1561
7SYH|1|2|C|1562
7SYH|1|2|G|1563
*
7SYH|1|2|C|1572
7SYH|1|2|G|1573
7SYH|1|2|C|1574
7SYH|1|2|G|1575
7SYH|1|2|G|1576

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

eS19