IL_7SYH_104

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

7SYH|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|A|599
7SYH|1|2|G|600
7SYH|1|2|G|601
7SYH|1|2|G|602
7SYH|1|2|C|603
7SYH|1|2|A|604
7SYH|1|2|A|605
7SYH|1|2|G|606
7SYH|1|2|U|607
7SYH|1|2|C|608
*
7SYH|1|2|G|635
7SYH|1|2|C|636
7SYH|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30