IL_7SYH_108

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7SYH|1|2|C|1215, 7SYH|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_108 not in the Motif Atlas

Homologous match to IL_8CRE_445

Geometric discrepancy: 0.2827

The information below is about IL_8CRE_445

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7SYH|1|2|A|1214
7SYH|1|2|C|1215
7SYH|1|2|C|1216
7SYH|1|2|A|1217
*
7SYH|1|2|U|1681
7SYH|1|2|C|1682
7SYH|1|2|C|1683
7SYH|1|2|C|1684
7SYH|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain V

uS10

Chain d

eS28