IL_7SYH_110

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

ACAGGAUUGACAG*CUUUCUCGAUU

Length

24 nucleotides

Bulged bases

7SYH|1|2|G|1285, 7SYH|1|2|C|1292

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYH|1|2|A|1282
7SYH|1|2|C|1283
7SYH|1|2|A|1284
7SYH|1|2|G|1285
7SYH|1|2|G|1286
7SYH|1|2|A|1287
7SYH|1|2|U|1288
7SYH|1|2|U|1289
7SYH|1|2|G|1290
7SYH|1|2|A|1291
7SYH|1|2|C|1292
7SYH|1|2|A|1293
7SYH|1|2|G|1294
*
7SYH|1|2|C|1305
7SYH|1|2|U|1306
7SYH|1|2|U|1307
7SYH|1|2|U|1308
7SYH|1|2|C|1309
7SYH|1|2|U|1310
7SYH|1|2|C|1311
7SYH|1|2|G|1312
7SYH|1|2|A|1313
7SYH|1|2|U|1314
7SYH|1|2|U|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a