IL_7SYI_011

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7SYI|1|2|C|142, 7SYI|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|130
7SYI|1|2|A|141
7SYI|1|2|C|142
7SYI|1|2|U|143
7SYI|1|2|U|144
*
7SYI|1|2|A|175
7SYI|1|2|U|176
7SYI|1|2|G|177
7SYI|1|2|C|178
7SYI|1|2|C|179
7SYI|1|2|G|180
7SYI|1|2|A|181
7SYI|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6