IL_7SYI_031

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAGGGCAAGUC*GCUC

Length

15 nucleotides

Bulged bases

7SYI|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|598
7SYI|1|2|A|599
7SYI|1|2|G|600
7SYI|1|2|G|601
7SYI|1|2|G|602
7SYI|1|2|C|603
7SYI|1|2|A|604
7SYI|1|2|A|605
7SYI|1|2|G|606
7SYI|1|2|U|607
7SYI|1|2|C|608
*
7SYI|1|2|G|635
7SYI|1|2|C|636
7SYI|1|2|U|637
7SYI|1|2|C|638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain K

uS4

Chain Y

uS12

Chain f

eS30