IL_7SYI_045

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7SYI|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_045 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1926

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7SYI|1|2|G|924
7SYI|1|2|G|925
7SYI|1|2|A|926
7SYI|1|2|C|927
*
7SYI|1|2|G|1014
7SYI|1|2|U|1015
7SYI|1|2|U|1016
7SYI|1|2|U|1017
7SYI|1|2|U|1018

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27