IL_7SYI_062

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

7SYI|1|2|C|1331, 7SYI|1|2|U|1494, 7SYI|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|1328
7SYI|1|2|U|1329
7SYI|1|2|G|1330
7SYI|1|2|C|1331
7SYI|1|2|A|1332
7SYI|1|2|U|1333
7SYI|1|2|G|1334
7SYI|1|2|G|1335
*
7SYI|1|2|U|1492
7SYI|1|2|C|1493
7SYI|1|2|U|1494
7SYI|1|2|G|1495
7SYI|1|2|U|1496
7SYI|1|2|G|1497
7SYI|1|2|A|1498
7SYI|1|2|U|1499
7SYI|1|2|G|1500
7SYI|1|2|C|1501

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29