IL_7SYI_068

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

7SYI|1|2|C|1403, 7SYI|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_068 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.4753

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|A|1402
7SYI|1|2|C|1403
7SYI|1|2|U|1404
7SYI|1|2|A|1405
7SYI|1|2|G|1406
*
7SYI|1|2|C|1440
7SYI|1|2|U|1441
7SYI|1|2|U|1442
7SYI|1|2|C|1443
7SYI|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10