IL_7SYI_071

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

7SYI|1|2|A|1580, 7SYI|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|1550
7SYI|1|2|U|1551
7SYI|1|2|G|1552
7SYI|1|2|C|1553
7SYI|1|2|C|1554
7SYI|1|2|U|1555
7SYI|1|2|A|1556
7SYI|1|2|C|1557
7SYI|1|2|C|1558
*
7SYI|1|2|G|1577
7SYI|1|2|U|1578
7SYI|1|2|A|1579
7SYI|1|2|A|1580
7SYI|1|2|C|1581
7SYI|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain R

uS9

Chain V

uS10

Chain e

eS29