IL_7SYI_078

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7SYI|1|2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_078 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.5503

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7SYI|1|2|U|1720
7SYI|1|2|U|1721
7SYI|1|2|G|1722
*
7SYI|1|2|U|1812
7SYI|1|2|A|1813

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12