IL_7SYI_095

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCGGCCC*GUCCGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|1267
7SYI|1|2|C|1268
7SYI|1|2|G|1269
7SYI|1|2|G|1270
7SYI|1|2|C|1271
7SYI|1|2|C|1272
7SYI|1|2|C|1273
*
7SYI|1|2|G|1510
7SYI|1|2|U|1511
7SYI|1|2|C|1512
7SYI|1|2|C|1513
7SYI|1|2|G|1514
7SYI|1|2|G|1515

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a