IL_7SYI_098

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGUU*ACAG

Length

8 nucleotides

Bulged bases

7SYI|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_098 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3086

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7SYI|1|2|C|1337
7SYI|1|2|G|1338
7SYI|1|2|U|1339
7SYI|1|2|U|1340
*
7SYI|1|2|A|1487
7SYI|1|2|C|1488
7SYI|1|2|A|1489
7SYI|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain E

uS3

Chain R

uS9

Chain V

uS10

Chain e

eS29