IL_7SYI_099

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUGCUA*UAGAGG

Length

13 nucleotides

Bulged bases

7SYI|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|C|1395
7SYI|1|2|A|1396
7SYI|1|2|U|1397
7SYI|1|2|G|1398
7SYI|1|2|C|1399
7SYI|1|2|U|1400
7SYI|1|2|A|1401
*
7SYI|1|2|U|1445
7SYI|1|2|A|1446
7SYI|1|2|G|1447
7SYI|1|2|A|1448
7SYI|1|2|G|1449
7SYI|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1