IL_7SYI_100

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

7SYI|1|2|U|1585, 7SYI|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYI|1|2|G|1541
7SYI|1|2|C|1542
7SYI|1|2|U|1543
7SYI|1|2|C|1544
7SYI|1|2|A|1545
7SYI|1|2|G|1546
7SYI|1|2|C|1547
7SYI|1|2|G|1548
7SYI|1|2|U|1549
7SYI|1|2|G|1550
*
7SYI|1|2|C|1582
7SYI|1|2|C|1583
7SYI|1|2|G|1584
7SYI|1|2|U|1585
7SYI|1|2|U|1586
7SYI|1|2|G|1587
7SYI|1|2|A|1588
7SYI|1|2|A|1589
7SYI|1|2|C|1590
7SYI|1|2|C|1591
7SYI|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25 (S25)

Chain e

eS29