IL_7SYI_102

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAGG*UCGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYI_102 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.2671

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7SYI|1|2|U|1733
7SYI|1|2|G|1734
7SYI|1|2|A|1735
7SYI|1|2|G|1736
7SYI|1|2|G|1737
*
7SYI|1|2|U|1797
7SYI|1|2|C|1798
7SYI|1|2|G|1799
7SYI|1|2|A|1800
7SYI|1|2|A|1801

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8